Publications since 2016 Publications until 2015
TOTAL NO. PUBLICATIONS: 256
  • Limiting replication stress during somatic cell reprogramming reduces genomic instability in induced pluripotent stem cells

  • Ruiz S, Lopez-Contreras AJ, Gabut M et al including Marques-Bonet T.
    Nat Commun. 2015 Aug 21;6:8036. doi: 10.1038/ncomms9036.

  • Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop

  • Sali A, Berman HM, Schwede T et al including Marti-Renom MA.
    Structure. 2015 Jul 7;23(7):1156-67. doi: 10.1016/j.str.2015.05.013. Epub 2015 Jun 18.

  • Whole-genome fingerprint of the DNA methylome during human B cell differentiation

  • Kulis M, Merkel A, Heath S, Queirós AC, Schuyler RP, Castellano G, Beekman R, Raineri E, Esteve A, Clot G, Verdaguer-Dot N, Duran-Ferrer, M, Russinyol N, Vilarrasa-Blasi R, Ecker S, Pancaldi V, Rico D, Agueda L, Blanc J, Richardson D, Clarke L, Datta A, Pascual M, Agirre X, Prosper F, Alignani D, Paiva B, Caron G, Fest T, Muench MO, Fomin ME, Lee ST, Wiemels JL, Valencia A, Gut M, Flicek P, Stunnenberg HG, Siebert R, Küppers R, Gut IG, Campo E & Martín-Subero JI.
    Nat Genet. 2015 Jul;47(7):746-56. doi: 10.1038/ng.3291. Epub 2015 Jun 8.

  • Efficient Alignment of Illumina-Like High-Throughput Sequencing Reads with the GEnomic Multi-tool (GEM) Mapper

  • Marco-Sola S, Ribeca P1
    Curr Protoc Bioinformatics. 2015 Jun 19;50:11.13.1-20. doi: 10.1002/0471250953.bi1113s50.

  • Analysis of Five Gene Sets in Chimpanzees Suggests Decoupling between the Action of Selection on Protein-Coding and on Noncoding Elements

  • Santpere G, Carnero-Montoro E, Petit N, Serra F et al.
    Genome Biol Evol. 2015 May 14;7(6):1490-505. doi: 10.1093/gbe/evv082

  • Genetics of skin color variation in Europeans: genome-wide association studies with functional follow-up

  • Liu F, Visser M, Duffy DL et al including Lao O.
    Hum Genet. 2015; 134(8): 823–835. Published online 2015 May 12. doi:
    10.1007/s00439-015-1559-0

  • Human genomics. Effect of predicted protein-truncating genetic variants on the human transcriptome

  • Rivas MA, Pirinen M, Conrad DF et al and Ribeca P, Lizano E, Beltran S, Gut M, Kahlem K, Gut IG as collaborators.
    Science. 2015 May 8;348(6235):666-9. doi: 10.1126/science.1261877.

  • Common colorectal cancer risk alleles contribute to the multiple colorectal adenoma phenotype, but do not influence colonic polyposis in FAP

  • Cheng TH, Gorman M, Martin L et al and Gut I, Heath S as collaborators.
    Eur J Hum Genet. 2015 Feb;23(2):260-3. doi: 10.1038/ejhg.2014.74. Epub 2014 May 7.

  • Genomic characterization of mutant laboratory mouse strains by exome sequencing and annotation lift-over

  • Derdak S, Sabrautzki S, de Angelis MH, Gut M, Gut IG, Beltran S.
    BMC Genomics. 2015 May 6;16:351. doi: 10.1186/s12864-015-1548-7.

  • Extreme selective sweeps independently targeted the X chromosomes of the great apes

  • Nam K, Munch K, Hobolth A et al and Fernandez-Callejo M, Dabad M, Blanc J, Agueda-Calpena L, Gut M, Gut IG, Marques-Bonet T as collaborators.
    Proc Natl Acad Sci U S A. 2015 May 19;112(20):6413-8. doi: 10.1073/pnas.1419306112. Epub 2015 May 4.

  • Detecting individual ancestry in the human genome

  • Wollstein A, Lao O.
    Investig Genet. 2015 May 1;6:7. doi: 10.1186/s13323-015-0019-x. eCollection 2015.

  • Examining Phylogenetic Relationships Among Gibbon Genera Using Whole Genome Sequence Data Using an Approximate Bayesian Computation Approach

  • Veeramah KR, Woerner AE, Johnstone L, Gut I, Gut M, Marques-Bonet T, Carbone L, Wall JD, Hammer MF
    Genetics. 2015 May;200(1):295-308. doi: 10.1534/genetics.115.174425. Epub 2015 Mar 12.

  • Whole-epigenome analysis in multiple myeloma reveals DNA hypermethylation of B cell-specific enhancers

  • Agirre X, Castellano G, Pascual M et al including Heath S, Esteve A, Merkel A, Raineri E, Agueda L, Blanc J, Gut M, Gut IG.
    Genome Res. 2015 Apr;25(4):478-87. doi: 10.1101/gr.180240.114. Epub 2015 Feb 2.

  • Assessing the limits of restraint-based 3D modeling of genomes and genomic domains

  • Trussart M, Serra F, Baù D, Junier I, Serrano L, Marti-Renom MA.
    Nucleic Acids Res. 2015 Apr 20;43(7):3465-77. doi: 10.1093/nar/gkv221. Epub 2015 Mar 23.

  • Mountain gorilla genomes reveal the impact of long-term population decline and inbreeding

  • Xue Y, Prado-Martinez J, Sudmant PH et al including Marques-Bonet T.
    Science. 2015 Apr 10;348(6231):242-5. doi: 10.1126/science.aaa3952. Epub 2015 Apr 9.

  • Ligand-Target Prediction by Structural Network Biology Using nAnnoLyze

  • Martínez-Jiménez F, Marti-Renom MA.
    PLoS Comput Biol. 2015 Mar 27;11(3):e1004157. doi: 10.1371/journal.pcbi.1004157. eCollection 2015.

  • Early-onset chronic axonal neuropathy, strokes, and hemolysis: Inherited CD59 deficiency

  • Haliloglu G, Maluenda J, Sayinbatur B et al including Gut I.
    Neurology. 2015 Mar 24;84(12):1220-4. doi: 10.1212/WNL.0000000000001391. Epub 2015 Feb 25.

  • Colorectal adenomas contain multiple somatic mutations that do not coincide with synchronous adenocarcinoma specimens

  • Vaqué JP, Martínez N, Varela I, Fernández F et al including Derdak S, Beltran S, Bayés M, Gut I.
    PLoS One. 2015 Mar 16;10(3):e0119946. doi: 10.1371/journal.pone.0119946. eCollection 2015.

  • Epigenetic remodeling in B-cell acute lymphoblastic leukemia occurs in two tracks and employs embryonic stem cell-like signatures

  • Lee ST, Muench MO, Fomin ME, Xiao J et al including Heath S.
    Nucleic Acids Res. 2015 Mar 11;43(5):2590-602. doi: 10.1093/nar/gkv103. Epub 2015 Feb 17.

  • Transcription-Dependent Generation of a Specialized Chromatin Structure at the TCR? Locus

  • Zacarías-Cabeza J, Belhocine M, Vanhille L et al including Gut M, Gut I.
    J Immunol. 2015 Apr 1;194(7):3432-43. doi: 10.4049/jimmunol.1400789. Epub 2015 Mar 2.

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