TitleDateReferenceDOI
beta-Catenin activity induces an RNA biosynthesis program promoting therapy resistance in T-cell acute lymphoblastic leukemia2023-02-08Garcia-Hernandez, V; Arambilet, D; Guillen, Y; Lobo-Jarne, T; Maqueda, M; Gekas, C; Gonzalez, J; Iglesias, A; Vega-Garcia, N; Sentis, I; Trincado, JL; (2023). beta-Catenin activity induces an RNA biosynthesis program promoting therapy resistance in T-cell acute lymphoblastic leukemia. Embo Molecular Medicine, 15(2), e16554-. DOI: 10.15252/emmm.202216554https://doi.org/10.15252/emmm.202216554
Contrasting transcriptomic patterns reveal a genomic basis for drought resilience in the relict fir Abies pinsapo Boiss2023-02-04Cobo-Simon, I; Maloof, JN; Li, RJ; Amini, H; Mendez-Cea, B; Garcia-Garcia, I; Gomez-Garrido, J; Esteve-Codina, A; Dabad, M; Alioto, T; Wegrzyn, JL; Se (2023). Contrasting transcriptomic patterns reveal a genomic basis for drought resilience in the relict fir Abies pinsapo Boiss. Tree Physiology, 43(2), 315-334. DOI: 10.1093/treephys/tpac115https://doi.org/10.1093/treephys/tpac115
A novel phenotype of AChR-deficiency syndrome with predominant facial and distal weakness resulting from the inclusion of an evolutionary alternatively-spliced exon in CHRNA12023-02-01Cruz, PMR; Ravenscroft, G; Natera, D; Carr, A; Manzur, A; Liu, WW; Vella, NR; Jerico, I; Gonzalez-Quereda, L; Gallano, P; Montalto, SA; Davis, MR; Lam (2023). A novel phenotype of AChR-deficiency syndrome with predominant facial and distal weakness resulting from the inclusion of an evolutionary alternatively-spliced exon in CHRNA1. Neuromuscular Disorders, 33(2), 161-168. DOI: 10.1016/j.nmd.2022.12.011https://doi.org/10.1016/j.nmd.2022.12.011
The molecular evolution of spermatogenesis across mammals2023-01-12Murat, F; Mbengue, N; Winge, SB; Trefzer, T; Leushkin, E; Sepp, M; Cardoso-Moreira, M; Schmidt, J; Schneider, C; Moessinger, K; Bruening, T; Lamanna, (2023). The molecular evolution of spermatogenesis across mammals. Nature, 613(7943), 308-+. DOI: 10.1038/s41586-022-05547-7https://doi.org/10.1038/s41586-022-05547-7
Global analysis of the association between pig muscle fatty acid composition and gene expression using RNA-Seq2023-01-11Valdes-Hernandez, J; Ramayo-Caldas, Y; Passols, M; Sebastia, C; Criado-Mesas, L; Crespo-Piazuelo, D; Esteve-Codina, A; Castello, A; Sanchez, A; Folch, (2023). Global analysis of the association between pig muscle fatty acid composition and gene expression using RNA-Seq. Scientific Reports, 13(1), 535-. DOI: 10.1038/s41598-022-27016-xhttps://doi.org/10.1038/s41598-022-27016-x
The power of geohistorical boundaries for modeling the genetic background of human populations: The case of the rural catalan Pyrenees2023-01-10Fibla, J; Maceda, I; Laplana, M; Guerrero, M; Alvarez, MM; Burgueno, J; Camps, A; Fabrega, J; Felisart, J; Grane, J; Remon, JL; Serra, J; Moral, P; La (2023). The power of geohistorical boundaries for modeling the genetic background of human populations: The case of the rural catalan Pyrenees. Frontiers In Genetics, 13(), 1100440-. DOI: 10.3389/fgene.2022.1100440https://doi.org/10.3389/fgene.2022.1100440
Liquidhope: methylome and genomic profiling from very limited quantities of plasma -derived DNA2023-01-05Trinidad, EM; Vidal, E; Coronado, E; Esteve-Codina, A; Castel, V; Cafiete, A; Gut, M; Heath, S; De Mora, JF (2023). Liquidhope: methylome and genomic profiling from very limited quantities of plasma -derived DNA. Briefings In Bioinformatics, 24(1), -. DOI: 10.1093/bib/bbac575https://doi.org/10.1093/bib/bbac575
cvlr: finding heterogeneously methylated genomic regions using ONT reads2023-01-05Raineri, E; Pla, MAI; Dabad, M; Heath, S (2023). cvlr: finding heterogeneously methylated genomic regions using ONT reads. Bioinformatics Advances, 3(1), vbac101-. DOI: 10.1093/bioadv/vbac101https://doi.org/10.1093/bioadv/vbac101
Exon-intron split analysis reveals posttranscriptional regulatory signals induced by high and low n-6/n-3 polyunsaturated fatty acid ratio diets in piglets2023-01-03Manaig, YJY; Marmol-Sanchez, E; Castello, A; Esteve-Codina, A; Sandrini, S; Savoini, G; Agazzi, A; Sanchez, A; Folch, JM (2023). Exon-intron split analysis reveals posttranscriptional regulatory signals induced by high and low n-6/n-3 polyunsaturated fatty acid ratio diets in piglets. Journal Of Animal Science, 101(), skad271-. DOI: 10.1093/jas/skad271https://doi.org/10.1093/jas/skad271
Circulating small RNA signatures differentiate accurately the subtypes of muscular dystrophies: small-RNA next-generation sequencing analytics and functional insights2022-12-31Kakouri, AC; Koutalianos, D; Koutsoulidou, A; Oulas, A; Tomazou, M; Nikolenko, N; Turner, C; Roos, A; Lusakowska, A; Janiszewska, K; Papadimas, GK; Pa (2022). Circulating small RNA signatures differentiate accurately the subtypes of muscular dystrophies: small-RNA next-generation sequencing analytics and functional insights. Rna Biology, 19(1), 507-518. DOI: 10.1080/15476286.2022.2058817https://doi.org/10.1080/15476286.2022.2058817
Principles of 3D chromosome folding and evolutionary genome reshuffling in mammals2022-12-20Alvarez-Gonzalez, L; Arias-Sarda, C; Montes-Espuna, L; Marin-Gual, L; Vara, C; Lister, NC; Cuartero, Y; Garcia, F; Deakin, J; Renfree, MB; Robinson, T (2022). Principles of 3D chromosome folding and evolutionary genome reshuffling in mammals. Cell Reports, 41(12), 111839-. DOI: 10.1016/j.celrep.2022.111839https://doi.org/10.1016/j.celrep.2022.111839
DNA methylation in human gastric epithelial cells defines regional identity without restricting lineage plasticity2022-12-01Fritsche, K; Boccellato, F; Schlaermann, P; Koeppel, M; Denecke, C; Link, A; Malfertheiner, P; Gut, I; Meyer, TF; Berger, H (2022). DNA methylation in human gastric epithelial cells defines regional identity without restricting lineage plasticity. Clinical Epigenetics, 14(1), 193-. DOI: 10.1186/s13148-022-01406-4https://doi.org/10.1186/s13148-022-01406-4
BiP inactivation due to loss of the deAMPylation function of FICD causes a motor neuron disease2022-12-01Rebelo, AP; Ruiz, A; Dohrn, MF; Wayand, M; Farooq, A; Danzi, MC; Beijer, D; Aaron, B; Vandrovcova, J; Houlden, H; Matalonga, L; Abreu, L; Rouleau, G; (2022). BiP inactivation due to loss of the deAMPylation function of FICD causes a motor neuron disease. Genetics In Medicine, 24(12), 2487-2500. DOI: 10.1016/j.gim.2022.08.019https://doi.org/10.1016/j.gim.2022.08.019
NCAM1 and GDF15 are biomarkers of Charcot-Marie-Tooth disease in patients and mice2022-11-21Jennings, MJ; Kagiava, A; Vendredy, L; Spaulding, EL; Stavrou, M; Hathazi, D; Gruneboom, A; De Winter, V; Gess, B; Schara, U; Pogoryelova, O; Lochmull (2022). NCAM1 and GDF15 are biomarkers of Charcot-Marie-Tooth disease in patients and mice. Brain, 145(11), 3999-4015. DOI: 10.1093/brain/awac055https://doi.org/10.1093/brain/awac055
Metastatic recurrence in colorectal cancer arises from residual EMP1+ cells2022-11-17Cañellas-Socias, A; Cortina, C; Hernando-Momblona, X; Palomo-Ponce, S; Mulholland, EJ; Turon, G; Mateo, L; Conti, S; Roman, O; Sevillano, M; Slebe, F; (2022). Metastatic recurrence in colorectal cancer arises from residual EMP1+ cells. Nature, 611(7936), 603-613. DOI: 10.1038/s41586-022-05402-9https://doi.org/10.1038/s41586-022-05402-9
The population genomic legacy of the second plague pandemic2022-11-07Gopalakrishnan, S; Ebenesersdottir, SS; Lundstrom, IKC; Turner-Walker, G; Moore, KHS; Luisi, P; Margaryan, A; Martin, MD; Ellegaard, MR; Magnusson, OP (2022). The population genomic legacy of the second plague pandemic. Current Biology, 32(21), 4743-+. DOI: 10.1016/j.cub.2022.09.023https://doi.org/10.1016/j.cub.2022.09.023
Cross-protection against African swine fever virus upon intranasal vaccination is associated with an adaptive-innate immune crosstalk2022-11-01Bosch-Camos, L; Alonso, U; Esteve-Codina, A; Chang, CY; Martin-Mur, B; Accensi, F; Munoz, M; Navas, MJ; Dabad, M; Vidal, E; Pina-Pedrero, S; Pleguezue (2022). Cross-protection against African swine fever virus upon intranasal vaccination is associated with an adaptive-innate immune crosstalk. Plos Pathogens, 18(11), e1010931-. DOI: 10.1371/journal.ppat.1010931https://doi.org/10.1371/journal.ppat.1010931
Estimating heritability of song considering within-individual variance in a wild songbird: The collared flycatcher2022-10-28Jablonszky, M; Canal, D; Hegyi, G; Herenyi, M; Laczi, M; Lao, O; Marko, G; Nagy, G; Rosivall, B; Szasz, E; Torok, J; Zsebok, S; Garamszegi, LZ (2022). Estimating heritability of song considering within-individual variance in a wild songbird: The collared flycatcher. Frontiers In Ecology And Evolution, 10(), 975687-. DOI: 10.3389/fevo.2022.975687https://doi.org/10.3389/fevo.2022.975687
scTAM-seq enables targeted high-confidence analysis of DNA methylation in single cells2022-10-28Bianchi, A; Scherer, M; Zaurin, R; Quililan, K; Velten, L; Beekman, R (2022). scTAM-seq enables targeted high-confidence analysis of DNA methylation in single cells. Genome Biology, 23(1), 229-. DOI: 10.1186/s13059-022-02796-7https://doi.org/10.1186/s13059-022-02796-7
The ulcerative colitis-associated gene FUT8 regulates the quantity and quality of secreted mucins2022-10-19Cantero-Recasens, G; Burballa, C; Ohkawa, Y; Fukuda, T; Harada, Y; Curwin, AJ; Brouwers, N; Thun, GA; Gu, JG; Gut, I; Taniguchi, N; Malhotra, V (2022). The ulcerative colitis-associated gene FUT8 regulates the quantity and quality of secreted mucins. Proceedings Of The National Academy Of Sciences Of The United States Of America, 119(43), e2205277119-. DOI: 10.1073/pnas.2205277119https://doi.org/10.1073/pnas.2205277119