TOTAL NO. PUBLICATIONS: 413
  • Using tertiary structure for the computation of highly accurate multiple RNA alignments with the SARA-Coffee package

  • Kemena C, Bussotti G, Capriotti E, Marti-Renom MA, Notredame C.
    Bioinformatics. 2013 May 1;29(9):1112-9. doi: 10.1093/bioinformatics/btt096. Epub 2013 Feb 28.

  • RNA polymerase II progression through H3K27me3-enriched gene bodies requires JMJD3 histone demethylase

  • Estarás C, Fueyo R, Akizu N, Beltrán S, Martínez-Balbás MA.
    Mol Biol Cell. 2013 Feb;24(3):351-60. doi: 10.1091/mbc.E12-07-0561. Epub 2012 Dec 14.

  • Deep RNA sequencing of the skeletal muscle transcriptome in swimming fish

  • Palstra AP, Beltran S, Burgerhout E, Brittijn SA et al.
    PLoS One. 2013;8(1):e53171. doi: 10.1371/journal.pone.0053171. Epub 2013 Jan 8.

  • Genome-wide association study identifies loci on 12q24 and 13q32 associated with Tetralogy of Fallot

  • Cordell HJ, Töpf A, Mamasoula C et al including Heath S.
    Hum Mol Genet. 2013 Apr 1;22(7):1473-81. doi: 10.1093/hmg/dds552. Epub 2013 Jan 7.

  • High-Specificity Single-Tube Multiplex Genotyping Using Ribo-PAP PCR, Tag Primers, Alkali Cleavage of RNA/DNA Chimeras and MALDI-TOF MS

  • Mauger F, Gelfand DH, Gupta A, Bodepudi V, Will SG, Bauer K, Myers TW, Gut IG.
    Hum Mutat. 2013 Jan;34(1):266-73. doi: 10.1002/humu.22227. Epub 2012 Nov 8.

  • Similarity in recombination rate and linkage disequilibrium at CYP2C and CYP2D cytochrome P450 gene regions among Europeans indicates signs of selection and no advantage of using tagSNPs in population isolates

  • Pimenoff VN, Laval G, Comas D, Palo JU, Gut I, Cann H, Excoffier L, Sajantila A.
    Pharmacogenet Genomics. 2012 Dec;22(12):846-857.

  • The GEM mapper: fast, accurate and versatile alignment by filtration

  • Marco-Sola S, Sammeth M, Guigó R and
    _Ribeca P_
    Nature Methods (2012) doi:10.1038/nmeth.2221

  • CpG islands and GC content dictate nucleosome depletion in a transcription-independent manner at mammalian promoters

  • Fenouil R, Cauchy P, Koch F, Descostes N, Cabeza JZ, Innocenti C, Ferrier P, Spicuglia S, Gut M, Gut I, Andrau JC.
    Genome Res. 2012 Dec;22(12):2399-408. doi: 10.1101/gr.138776.112. Epub 2012 Oct 25.

  • Epigenomic analysis detects widespread gene-body DNA hypomethylation in chronic lymphocytic leukemia

  • Kulis M, Heath S, Bibikova M, et al including Bayés M, Gut M, Gut I.
    Nat Genet. 2012 Oct 14;44(11):1236-42. doi: 10.1038/ng.2443. Epub 2012 Oct 14.

  • Liver transcriptome profile in pigs with extreme phenotypes of intramuscular fatty acid composition

  • Ramayo-Caldas Y, Mach N, Esteve-Codina A at al including Estelle J.
    BMC Genomics. 2012 Oct 11;13:547. doi: 10.1186/1471-2164-13-547.

  • SNP calling by sequencing pooled samples

  • Raineri E, Ferretti L, Esteve-Codina A, Nevado B, Heath S, Pérez-Enciso M.
    BMC Bioinformatics. 2012 Sep 20;13:239. doi: 10.1186/1471-2105-13-239.

  • Polar/Ionizable residues in transmembrane segments: effects on helix-helix packing

  • Bañó-Polo M, Baeza-Delgado C, Orzáez M, Marti-Renom MA, Abad C, Mingarro I.
    PLoS One. 2012;7(9):e44263. Epub 2012 Sep 12

  • Modelling and simulating generic RNA-Seq experiments with the flux simulator

  • Griebel T, Zacher B, Ribeca P, Raineri E, Lacroix V, Guigó R, Sammeth M.
    Nucleic Acids Res. 2012 Nov 1;40(20):10073-83. doi: 10.1093/nar/gks666. Epub 2012 Sep 7.

  • Landscape of transcription in human cells

  • Djebali S, Davis CA, Merkel A et al including Alioto T, Kingswood C, Ribeca P, Sammeth M.
    Nature. 2012 Sep 6;489(7414):101-8. doi: 10.1038/nature11233.

  • An integrated encyclopedia of DNA elements in the human genome

  • The ENCODE Project Consortium including Alioto T, Kingswood C, Ribeca P, Sammeth M
    Nature 489, 57–74 06 September 2012

  • A mechanistic basis for amplification differences between samples and between genome regions

  • Veal CD, Freeman PJ, Jacobs K, Lancaster O, Jamain S, Leboyer M, Alabanes D, Vaghela RR, Gut I, Chanock SJ, Brookes AJ
    BMC Genomics. 2012 Sep 5;13:455. doi: 10.1186/1471-2164-13-455.

  • Comparison of SNPs and microsatellites for assessing the genetic structure of chicken populations

  • Gärke C, Ytournel F, Bed'hom B, Gut I, Lathrop M, Weigend S, Simianer H.
    Anim Genet. 2012 Aug;43(4):419-28. doi: 10.1111/j.1365-2052.2011.02284.x. Epub 2011 Nov 8.

  • An association study of sequence variants in the forkhead box P2 (FOXP2) gene and adulthood attention-deficit/hyperactivity disorder in two European samples

  • Ribasés M, Sánchez-Mora C, Ramos-Quiroga JA including Bayes M.
    Psychiatr Genet. 2012 Aug;22(4):155-60. doi: 10.1097/YPG.0b013e328353957e.

  • Genome-wide analysis reveals that Smad3 and JMJD3 HDM co-activate the neural developmental program

  • Estarás C, Akizu N, García A, Beltrán S, de la Cruz X, Martínez-Balbás MA.
    Development. 2012 Aug;139(15):2681-91. doi: 10.1242/dev.078345.

  • The genome of melon (Cucumis melo L.)

  • Garcia-Mas J, Benkak A, Sanseverino W et al including Alioto T
    Proc Natl Acad Sci U S A. 2012

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