TOTAL NO. PUBLICATIONS: 413
  • Machine Learning Identifies Stemness Features Associated with Oncogenic Dedifferentiation

  • Malta TM, Sokolov A, Gentles AJ, Burzykowski T, Poisson L, Weinstein JN, Kamińska B, Huelsken J, Omberg L, Gevaert O, Colaprico A, Czerwińska P, Mazurek S, Mishra L, Heyn H, Krasnitz A, Godwin AK, Lazar AJ; Cancer Genome Atlas Research Network, Stuart JM, Hoadley KA, Laird PW, Noushmehr H, Wiznerowicz M.

    Cell. 2018 Apr 5;173(2):338-354.e15. doi: 10.1016/j.cell.2018.03.034.

  • Selection in the Introgressed Regions of the Chimpanzee Genome

  • Nye J, Laayouni H, Kuhlwilm M, Mondal M, Marques-Bonet T, Bertranpetit J.

    Genome Biol Evol. 2018 Apr 1;10(4):1132-1138. doi: 10.1093/gbe/evy077.

  • RD-Connect, NeurOmics and EURenOmics: collaborative European initiative for rare diseases

  • Lochmüller H, Badowska DM, Thompson R, Knoers NV, Aartsma-Rus A, Gut I, Wood L, Harmuth T, Durudas A, Graessner H, Schaefer F, Riess O; RD-Connect consortium; NeurOmics consortium; EURenOmics consortium.

    Eur J Hum Genet. 2018 Feb 27. doi: 10.1038/s41431-018-0115-5. [Epub ahead of print]

  • Transcriptional alterations in skin fibroblasts from Parkinson's disease patients with parkin mutations

  • González-Casacuberta I, Morén C, Juárez-Flores DL, Esteve-Codina A, Sierra C, Catalán-García M, Guitart-Mampel M, Tobías E, Milisenda JC, Pont-Sunyer C, Martí MJ, Cardellach F, Tolosa E, Artuch R, Ezquerra M, Fernández-Santiago R, Garrabou G.

    Neurobiol Aging. 2018 Feb 7;65:206-216. doi: 10.1016/j.neurobiolaging.2018.01.021. [Epub ahead of print]

  • OneD: increasing reproducibility of Hi-C samples with abnormal karyotypes

  • Vidal E, le Dily F, Quilez J, Stadhouders R, Cuartero Y, Graf T, Marti-Renom MA, Beato M, Filion GJ.

    Nucleic Acids Res. 2018 Jan 31. doi: 10.1093/nar/gky064. [Epub ahead of print]

  • Novel mutation in the choroideremia gene and multi-Mendelian phenotypes in Spanish families.

  • de Castro-Miró M, Tonda R, Marfany G, Casaroli-Marano RP, Gonzàlez-Duarte R.

    Br J Ophthalmol. 2018 Jan 24. pii: bjophthalmol-2017-311427. doi: 10.1136/bjophthalmol-2017-311427. [Epub ahead of print]

  • Hipposignaling controls cell cycleandrestricts cell plasticity in planarians

  • de Sousa N, Rodríguez-Esteban G, Rojo-Laguna JI, Saló E, Adell T.

    PLoS Biol. 2018 Jan 22;16(1):e2002399. doi: 10.1371/journal.pbio.2002399. eCollection 2018 Jan.

  • Rare germline copy number variants in colorectal cancer predisposition characterized by exome sequencing analysis

  • Franch-Expósito S, Esteban-Jurado C, Garre P, Quintanilla I, Duran-Sanchon S, Díaz-Gay M, Bonjoch L, Cuatrecasas M, Samper E, Muñoz J, Ocaña T, Carballal S, López-Cerón M, Castells A; EPICOLON consortium, Vila-Casadesús M, Derdak S, Laurie S, Beltran S, Carvajal J, Bujanda L, Ruiz-Ponte C, Camps J, Gironella M, Lozano JJ, Balaguer F, Cubiella J, Caldés T, Castellví-Bel S.

    J Genet Genomics. 2018 Jan 20;45(1):41-45. doi: 10.1016/j.jgg.2017.12.001. Epub 2017 Dec 20.

  • Genomic and Phenotypic Variation in Morphogenetic Networks of Two Candida albicans Isolates Subtends Their Different Pathogenic Potential

  • Duccio Cavalieri, Monica Di Paola, Lisa Rizzetto, Noemi Tocci, Carlotta De Filippo, Paolo Lionetti, Andrea Ardizzoni, Bruna Colombari, Simona Paulone, Ivo G. Gut, Luisa Berná, Marta Gut, Julie Blanc, Misha Kapushesky, Eva Pericolini, Elisabetta Blasi, Samuele Peppoloni.

    Front. Immunol., 19 January 2018 | https://doi.org/10.3389/fimmu.2017.01997

  • Transcription factors orchestrate dynamic interplay between genome topology and gene regulation during cell reprogramming

  • Stadhouders R, Vidal E, Serra F, Di Stefano B, Le Dily F, Quilez J, Gomez A, Collombet S, Berenguer C, Cuartero Y, Hecht J, Filion GJ, Beato M, Marti-Renom MA, Graf T.

    Nat Genet. 2018 Jan 15. doi: 10.1038/s41588-017-0030-7. [Epub ahead of print]

  • A De Novo FOXP1 Truncating Mutation in a Patient Originally Diagnosed as C Syndrome

  • Urreizti R, Damanti S, Esteve C, Franco-Valls H, Castilla-Vallmanya L, Tonda R, Cormand B, Vilageliu L, Opitz JM, Neri G, Grinberg D, Balcells S.

    Sci Rep. 2018 Jan 12;8(1):694. doi: 10.1038/s41598-017-19109-9.

  • Mutations in Vps15 perturb neuronal migration in mice and are associated with neurodevelopmental disease in humans

  • Gstrein T, Edwards A, Přistoupilová A, Leca I, Breuss M, Pilat-Carotta S, Hansen AH, Tripathy R, Traunbauer AK, Hochstoeger T, Rosoklija G, Repic M, Landler L, Stránecký V, Dürnberger G, Keane TM, Zuber J, Adams DJ, Flint J, Honzik T, Gut M, Beltran S, Mechtler K, Sherr E, Kmoch S, Gut I, Keays DA.

    Nat Neurosci. 2018 Jan 8. doi: 10.1038/s41593-017-0053-5. [Epub ahead of print]

  • Similar genomic proportions of copy number variation within gray wolves and modern dog breeds inferred from whole genome sequencing

  • Serres-Armero A, Povolotskaya IS, Quilez J, Ramirez O, Santpere G, Kuderna LFK, Hernandez-Rodriguez J, Fernandez-Callejo M, Gomez-Sanchez D, Freedman AH, Fan Z, Novembre J, Navarro A, Boyko A, Wayne R, Vilà C, Lorente-Galdos B, Marques-Bonet T.

    BMC Genomics. 2017 Dec 19;18(1):977. doi: 10.1186/s12864-017-4318-x.

  • Hypoxia-mediated translational activation of ITGB3 in breast cancer cells enhances TGF-β signalling and malignant features in vitro and in vivo

  • Marta Sesé, Pedro Fuentes, Anna Esteve-Codina, Eva Béjar, Kimberley McGrail, George Thomas, Trond Aasen, Santiago Ramón y Cajal.

    Oncotarget. 2017; 8:114856-114876. https://doi.org/10.18632/oncotarget.23145

  • TRIM28 and Interacting KRAB-ZNFs Control Self-Renewal of Human Pluripotent Stem Cells through Epigenetic Repression of Pro-differentiation Genes

  • Oleksiewicz U, Gładych M, Raman AT, Heyn H, Mereu E, Chlebanowska P, Andrzejewska A, Sozańska B, Samant N, Fąk K, Auguścik P, Kosiński M, Wróblewska JP, Tomczak K, Kulcenty K, Płoski R, Biecek P, Esteller M, Shah PK, Rai K, Wiznerowicz M.

    Stem Cell Reports. 2017 Dec 12;9(6):2065-2080. doi: 10.1016/j.stemcr.2017.10.031. Epub 2017 Nov 30.

  • FOXP2 variation in great ape populations offers insight into the evolution of communication skills

  • Staes N, Sherwood CC, Wright K, de Manuel M, Guevara EE, Marques-Bonet T, Krützen M, Massiah M, Hopkins WD, Ely JJ, Bradley BJ.

    Sci Rep. 2017 Dec 4;7(1):16866. doi: 10.1038/s41598-017-16844-x.

  • The novel evolution of the sperm whale genome

  • Warren WC, Kuderna L, Alexander A, Catchen J, Pérez-Silva JG, López-Otín C, Quesada V, Minx P, Tomlinson C, Montague MJ, Farias FHG, Walter RB, Marques-Bonet T, Glenn T, Kieran TJ, Wise SS, Wise JP Jr, Waterhouse RM, Wise JP Sr.

    Genome Biol Evol. 2017 Dec 1;9(12):3260-3264. doi: 10.1093/gbe/evx187.

  • Single-cell absolute contact probability detection reveals chromosomes are organized by multiple low-frequency yet specific interactions

  • Cattoni DI, Cardozo Gizzi AM, Georgieva M, Di Stefano M, Valeri A, Chamousset D, Houbron C, Déjardin S, Fiche JB, González I, Chang JM, Sexton T, Marti-Renom MA, Bantignies F, Cavalli G, Nollmann M.

    Nat Commun. 2017 Nov 24;8(1):1753. doi: 10.1038/s41467-017-01962-x.

  • Molecular and cellular reorganization of neural circuits in the human lineage

  • Sousa AMM, Zhu Y, Raghanti MA, Kitchen RR, Onorati M, Tebbenkamp ATN, Stutz B, Meyer KA, Li M, Kawasawa YI, Liu F, Perez RG, Mele M, Carvalho T, Skarica M, Gulden FO, Pletikos M, Shibata A, Stephenson AR, Edler MK, Ely JJ, Elsworth JD, Horvath TL, Hof PR, Hyde TM, Kleinman JE, Weinberger DR, Reimers M, Lifton RP, Mane SM, Noonan JP, State MW, Lein ES, Knowles JA, Marques-Bonet T, Sherwood CC, Gerstein MB, Sestan N.

    Science. 2017 Nov 24;358(6366):1027-1032. doi: 10.1126/science.aan3456.

  • Innate Cell-Mediated Cytotoxic Activity of European Sea Bass Leucocytes Against Nodavirus-Infected Cells: A Functional and RNA-seq Study

  • Chaves-Pozo E, Valero Y, Esteve-Codina A, Gómez-Garrido J, Dabad M, Alioto T, Meseguer J, Esteban MÁ, Cuesta A.

    Sci Rep. 2017 Nov 13;7(1):15396. doi: 10.1038/s41598-017-15629-6.

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